11/25/2023 0 Comments R install package non zero exit status![]() fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.c -o common.o Gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c api-common.c -o api-common.o fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall px.c -o px ![]() ** package ‘ps’ successfully unpacked and MD5 sums checked Installing package into ‘/home/patreyes/R’Īlso installing the dependencies ‘ps’, ‘processx’, ‘callr’, ‘units’, ‘pkgbuild’, ‘sf’, ‘rstan’, ‘shinystan’, ‘spdep’Ĭontent type 'application/x-gzip' length 261887 bytes (255 KB)Ĭontent type 'application/x-gzip' length 123430 bytes (120 KB)Ĭontent type 'application/x-gzip' length 94264 bytes (92 KB)Ĭontent type 'application/x-gzip' length 959885 bytes (937 KB)Ĭontent type 'application/x-gzip' length 29022 bytes (28 KB)Ĭontent type 'application/x-gzip' length 8441790 bytes (8.1 MB)Ĭontent type 'application/x-gzip' length 909934 bytes (888 KB)Ĭontent type 'application/x-gzip' length 2400413 bytes (2.3 MB)Ĭontent type 'application/x-gzip' length 1227625 bytes (1.2 MB)Ĭontent type 'application/x-gzip' length 4339824 bytes (4.1 MB) Here is the output for rPkgsInstall -pkgs ALL I'm also a beginner to both AFNI and Unix/Linux. I'm running Ubuntu in a terminal in Windows 10. Thanks.I'm having some trouble installing R packages for AFNI. Subject: RE: Problems loading R package into SPSS v 28.01.0 on Mac Intel Monterey Install.packages("/PATH/zip file ", repos = NULL, type="source") Look for binary zip file in the package page, download it and use the following command to get the package installed: That might be due to Apple OS compiler issues that some packages will not install unless you use their binary version. If that is checked off, then look for indications such as gfortran: No such a file or directory. If you get a non-zero exit status first check to ensure all dependencies are installed as well. You might try again using the install.packages code below substituing the zip file path with the downloaded information for each one. Hunting around on the web, I found this comment on Mac package installs. That indicates some error but offers no clue as to what the error is. It's annoying that the messages only report a nonzero install status. I don't see any issues with these packages as posted on CRAN, and they seem to have downloaded to your computer. You should be able to get a better error message. Installation of package 'polycor' had non-zero exit status Installation of package 'admisc' had non-zero exit status '/private/var/folders/39/_hr456vx1pn0hbtc4kzf7kcm0000gn/T/RtmpgYUxY7/downloaded_packages' Installing package into '/Users/jamesboyle/Library/Application Support/IBM/SPSS Statistics/28/extensions'Ĭontent type 'application/x-gzip' length 58494 bytes (57 KB)Ĭontent type 'application/x-gzip' length 13931 bytes (13 KB) Running the syntax gives the following error message: Is there a way of resolving this? Many thanks. I have installed HETCOR and also the R package polycor but there are runtime error messages. on an intel i5 Mac Pro running Monterey 12.1. What kind of errors are you seeing? If you can share the errors we should probably be able to locate the cause. Installation of package 'polycor' had non-zero exit status Installation of package 'admisc' had non-zero exit statusĢ: In install.packages("polycor", quiet = TRUE) : I'm getting the following error messages: Hi, Curtis, apologies for the delay in getting back to you. Subject: Problems loading R package into SPSS v 28.01.0 on Mac Intel Monterey
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